# hardware requirements: see https://github.com/wnd-charm/wnd-charm # Wndchrm - an open source utility for biological image analysis # WND-CHARM is an acronym that stands for "Weighted Neighbor Distance using Compound Hierarchy of Algorithms Representing Morphology." cd rm -rf wnd-charm # install prerequisites: sudo apt-get update sudo apt-get install build-essential libtiff4-dev libfftw3-dev libX11-dev libxt-dev libxaw7-dev phylip sudo apt-get install python-networkx python-skimage python-sklearn checkinstall sudo apt-get install python-matplotlib python-numpy python-pandas sudo apt-get install python-jsonschema openbox ipython python-scipy sudo apt-get install spyder unp python-pip build-essential python-dev swig sudo pip install --upgrade beautifulsoup4 numpy scipy matplotlib argparse sudo pip install --upgrade ipython mistune networkx pandas py4j runipy sudo pip install --upgrade scikit-image scikit-learn scipy-data_fitting sudo pip install --upgrade statsmodels jsonschema # install wnd-charm git clone https://github.com/wnd-charm/wnd-charm.git cd wnd-charm sudo ./configure sudo make sudo make check # change version from 'charm' to 1 when running sudo checkinstall to avoid errors! # so checkinstall build values should be as follows: # 0 - Maintainer: [ root ] # 1 - Summary: [ Package created with checkinstall 1.6.2 ] # 2 - Name: [ wnd ] # 3 - Version: [ 1 ] -> instead of invalid Version: [ charm ] # 4 - Release: [ 1 ] # 5 - License: [ GPL ] # 6 - Group: [ checkinstall ] # 7 - Architecture: [ amd64 ] # 8 - Source location: [ wnd-charm ] # 9 - Alternate source location: [ ] # 10 - Requires: [ ] # 11 - Provides: [ wnd ] # 12 - Conflicts: [ ] # 13 - Replaces: [ ] sudo checkinstall apt-cache show wnd # output of apt-cache show wnd should similar to this: # Package: wnd # Status: install ok installed # Priority: extra # Section: checkinstall # Installed-Size: 1076 # Maintainer: root # Architecture: amd64 # Version: 1-1 # Provides: wnd # Description: Package created with checkinstall 1.6.2 # Description-md5: 556b8d22567101c7733f37ce6557412e wndchrm
Posts Tagged ‘classifier’
How to compile and install wndchrm / WND-CHARM using bash script in Ubuntu 14.04 LTS 64-bit
Posted: 2015/04/01 in Data Science, UbuntuTags: 14.04, 64-bit, algorithm, analysis, bash, biological, classification, classifier, Data Science, image, ubuntu, wnd-charm, wndchrm
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